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SeqOthello: querying RNA-seq experiments at scale

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Record title

SeqOthello: querying RNA-seq experiments at scale

Record identifier

TN_cdi_doaj_primary_oai_doaj_org_article_24835eea579b472b8fd970df4bc79169

SeqOthello: querying RNA-seq experiments at scale

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https://collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_24835eea579b472b8fd970df4bc79169

SeqOthello: querying RNA-seq experiments at scale

Full title

SeqOthello: querying RNA-seq experiments at scale

Publisher

England: BioMed Central Ltd

Journal title

Genome Biology, 2018, Vol.19 (1), p.167-167

Record Identifier

TN_cdi_doaj_primary_oai_doaj_org_article_24835eea579b472b8fd970df4bc79169

Language

English

Formats

Publication information

Publisher

England: BioMed Central Ltd

More information

SCOPE AND CONTENTS

Contents

We present SeqOthello, an ultra-fast and memory-efficient indexing structure to support arbitrary sequence query against large collections of RNA-seq experiments. It takes SeqOthello only 5 min and 19.1 GB memory to conduct a global survey of 11,658 fusion events against 10,113 TCGA Pan-Cancer RNA-seq datasets. The query recovers 92.7% of tier-1 fu...

ALTERNATIVE TITLES

Full title

SeqOthello: querying RNA-seq experiments at scale

Identifiers

PRIMARY IDENTIFIERS

Record Identifier

TN_cdi_doaj_primary_oai_doaj_org_article_24835eea579b472b8fd970df4bc79169

Permalink

https://collection.sl.nsw.gov.au/record/TN_cdi_doaj_primary_oai_doaj_org_article_24835eea579b472b8fd970df4bc79169

OTHER IDENTIFIERS

ISSN

1474-760X,1474-7596

E-ISSN

1474-760X

DOI

10.1186/s13059-018-1535-9

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