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Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Full title: Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

Author/creator: Poen, Marjolein, Pohlmann, A, Amid, C, Bestebroer, Theo, Brookes, S M, Brown, IH, Everett, H, Schapendonk, Claudia, Scheuer, Rachel, Smits, Saskia, Beer, M, Fouchier, Ron, Ellis, RJ.

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Record Identifier: TN_cdi_plos_journals_2359360972

Language: English

Formats: Articles

Publishers: United States: Public Library of Science

Permalink: https://collection.sl.nsw.gov.au/record/TN_cdi_plos_journals_2359360972

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    Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

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    TN_cdi_plos_journals_2359360972

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    https://collection.sl.nsw.gov.au/record/TN_cdi_plos_journals_2359360972

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    Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

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    https://collection.sl.nsw.gov.au/record/TN_cdi_plos_journals_2359360972

    Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

    Full title

    Comparison of sequencing methods and data processing pipelines for whole genome sequencing and minority single nucleotide variant (mSNV) analysis during an influenza A/H5N8 outbreak

    Author / Creator

    Poen, Marjolein ; Pohlmann, A ; Amid, C ; Bestebroer, Theo ; Brookes, S M ; Brown, IH ; Everett, H ; Schapendonk, Claudia ; Scheuer, Rachel ; Smits, Saskia ; Beer, M ; Fouchier, Ron ; Ellis, RJ

    Publisher

    United States: Public Library of Science

    Journal title

    PloS one, 2020, Vol.15 (2), p.e0229326-e0229326

    Record Identifier

    TN_cdi_plos_journals_2359360972

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    English

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    Articles

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    Alignment Animals Biological properties Biological samples Biology and Life Sciences Collaboration Comparative analysis Computer and Information Sciences Conserved sequence Data analysis Data processing Deoxyribonucleic acid Disease Outbreaks - veterinary DNA DNA sequencing Drug resistance Ducks - virology Electronic data processing Epidemics Epidemiology Gene sequencing Genome, Viral Genomes Genomics Germany Hypotheses Influenza Influenza A Influenza A Virus, H5N8 Subtype - classification Influenza A Virus, H5N8 Subtype - genetics Information management Iran Laboratories Metadata Methods Molecular biology Netherlands Next-generation sequencing Nucleotide sequencing Nucleotides Orthomyxoviridae Infections - veterinary Orthomyxoviridae Infections - virology Outbreaks Pathogens Pipe lines Platforms Polymorphism, Single Nucleotide Research and Analysis Methods RNA, Viral - analysis RNA, Viral - genetics Sequence Analysis, DNA Standardization Studies Virology Viruses Whole genome sequencing Whole Genome Sequencing - methods

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    TN_cdi_plos_journals_2359360972

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    https://collection.sl.nsw.gov.au/record/TN_cdi_plos_journals_2359360972

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