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153 results for Woodcroft, Ben J.

153 results for

Woodcroft, Ben J

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GroopM: an automated tool for the recovery of population genomes from related metagenomes
Author / Creator:Imelfort, Michael ; Parks, Donovan ; Woodcroft, Ben J ; Dennis, Paul ; Hugenholtz, Philip ; Tyson, Gene W
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2014, Vol.2, p.e603-e603
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Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus
Author / Creator:Soo, Rochelle M ; Woodcroft, Ben J ; Parks, Donovan H ; Tyson, Gene W ; Hugenholtz, Philip
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2015, Vol.3, p.e968-e968
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An evolving view of methane metabolism in the Archaea
Author / Creator:Evans, Paul N ; Boyd, Joel A ; Leu, Andy O ; Woodcroft, Ben J ; Parks, Donovan H ; Hugenholtz, Philip ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:Nature reviews. Microbiology, 2019-04, Vol.17 (4), p.219-232
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Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
Author / Creator:Parks, Donovan H ; Rinke, Christian ; Chuvochina, Maria ; Chaumeil, Pierre-Alain ; Woodcroft, Ben J ; Evans, Paul N ; Hugenholtz, Philip ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:Nature microbiology, 2017-11, Vol.2 (11), p.1533-1542
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Methane dynamics regulated by microbial community response to permafrost thaw
Author / Creator:McCalley, Carmody K ; Woodcroft, Ben J ; Hodgkins, Suzanne B ; Wehr, Richard A ; Kim, Eun-Hae ; Mondav, Rhiannon ; Crill, Patrick M ; Chanton, Jeffrey P ; Rich, Virginia I ; Tyson, Gene W ; Saleska, Scott R
Publisher:England: Nature Publishing Group
Journal title:Nature (London), 2014-10-23, Vol.514 (7523), p.478-481
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Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals
Author / Creator:GRIMSON, Andrew ; SRIVASTAVA, Mansi ; FAHEY, Bryony ; WOODCROFT, Ben J ; ROSARIA CHIANG, H ; KING, Nicole ; DEGNAN, Bernard M ; ROKHSAR, Daniel S ; BARTEL, David P
Publisher:London: Nature Publishing
Journal title:Nature, 2008, Vol.455 (7217), p.1193-1197
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Methanotrophy across a natural permafrost thaw environment
Author / Creator:Singleton, Caitlin M ; McCalley, Carmody K ; Woodcroft, Ben J ; Boyd, Joel A ; Evans, Paul N ; Hodgkins, Suzanne B ; Chanton, Jeffrey P ; Frolking, Steve ; Crill, Patrick M ; Saleska, Scott R ; Rich, Virginia I ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:The ISME Journal, 2018-10, Vol.12 (10), p.2544-2558
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The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials
Author / Creator:McDougall, Carmel ; Woodcroft, Ben J ; Degnan, Bernard M
Publisher:United States: Public Library of Science
Journal title:PloS one, 2016, Vol.11 (7), p.e0159128-e0159128
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Genome-centric view of carbon processing in thawing permafrost
Author / Creator:Woodcroft, Ben J ; Singleton, Caitlin M ; Boyd, Joel A ; Evans, Paul N ; Emerson, Joanne B ; Zayed, Ahmed A F ; Hoelzle, Robert D ; Lamberton, Timothy O ; McCalley, Carmody K ; Hodgkins, Suzanne B ; Wilson, Rachel M ; Purvine, Samuel O ; Nicora, Carrie D ; Li, Changsheng ; Frolking, Steve ; Chanton, Jeffrey P ; Crill, Patrick M ; Saleska, Scott R ; Rich, Virginia I ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:Nature (London), 2018-08, Vol.560 (7716), p.49-54
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Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota
Author / Creator:Vanwonterghem, Inka ; Evans, Paul N ; Parks, Donovan H ; Jensen, Paul D ; Woodcroft, Ben J ; Hugenholtz, Philip ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:Nature microbiology, 2016-10-03, Vol.1 (12), p.16170-16170
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Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi
Author / Creator:Boyd, Joel A ; Jungbluth, Sean P ; Leu, Andy O ; Evans, Paul N ; Woodcroft, Ben J ; Chadwick, Grayson L ; Orphan, Victoria J ; Amend, Jan P ; Rappé, Michael S ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:The ISME Journal, 2019-05, Vol.13 (5), p.1269-1279
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Discovery of a novel methanogen prevalent in thawing permafrost
Author / Creator:Mondav, Rhiannon ; Woodcroft, Ben J ; Kim, Eun-Hae ; McCalley, Carmody K ; Hodgkins, Suzanne B ; Crill, Patrick M ; Chanton, Jeffrey ; Hurst, Gregory B ; VerBerkmoes, Nathan C ; Saleska, Scott R ; Hugenholtz, Philip ; Rich, Virginia I ; Tyson, Gene W
Publisher:England: Nature Publishing Group
Journal title:Nature communications, 2014, Vol.5 (1), p.3212-3212
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Does the High Gene Density in the Sponge NK Homeobox Gene Cluster Reflect Limited Regulatory Capacity?
Author / Creator:Fahey, Bryony ; Larroux, Claire ; Woodcroft, Ben J ; Degnan, Bernard M
Publisher:United States: Marine Biological Laboratory
Journal title:The Biological bulletin (Lancaster), 2008-06-01, Vol.214 (3), p.205-217
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Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes
Author / Creator:Emerson, Joanne B. ; Varner, Ruth K. ; Wik, Martin ; Parks, Donovan H. ; Neumann, Rebecca B. ; Johnson, Joel E. ; Singleton, Caitlin M. ; Woodcroft, Ben J. ; Tollerson, Rodney ; Owusu-Dommey, Akosua ; Binder, Morgan ; Freitas, Nancy L. ; Crill, Patrick M. ; Saleska, Scott R. ; Tyson, Gene W. ; Rich, Virginia I.
Publisher:London: Nature Publishing Group
Journal title:Nature communications, 2021-10-05, Vol.12 (1), p.5815-5815
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Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics
Author / Creator:Rinke, Christian ; Low, Serene ; Woodcroft, Ben J ; Raina, Jean-Baptiste ; Skarshewski, Adam ; Le, Xuyen H ; Butler, Margaret K ; Stocker, Roman ; Seymour, Justin ; Tyson, Gene W ; Hugenholtz, Philip
Publisher:United States: PeerJ. Ltd
Journal title:PeerJ (San Francisco, CA), 2016, Vol.4, p.e2486-e2486
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Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum
Author / Creator:Oehring, Sophie C ; Woodcroft, Ben J ; Moes, Suzette ; Wetzel, Johanna ; Dietz, Olivier ; Pulfer, Andreas ; Dekiwadia, Chaitali ; Maeser, Pascal ; Flueck, Christian ; Witmer, Kathrin ; Brancucci, Nicolas M B ; Niederwieser, Igor ; Jenoe, Paul ; Ralph, Stuart A ; Voss, Till S
Publisher:England
Journal title:Genome biology, 2012-11-26, Vol.13 (11), p.R108-R108
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Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes
Author / Creator:Doyle, Maria A ; Gasser, Robin B ; Woodcroft, Ben J ; Hall, Ross S ; Ralph, Stuart A
Publisher:England: BioMed Central Ltd
Journal title:BMC genomics, 2010-04-03, Vol.11 (1), p.222-222
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Host-linked soil viral ecology along a permafrost thaw gradient
Author / Creator:Emerson, Joanne B ; Roux, Simon ; Brum, Jennifer R ; Bolduc, Benjamin ; Woodcroft, Ben J ; Jang, Ho Bin ; Singleton, Caitlin M ; Solden, Lindsey M ; Naas, Adrian E ; Boyd, Joel A ; Hodgkins, Suzanne B ; Wilson, Rachel M ; Trubl, Gareth ; Li, Changsheng ; Frolking, Steve ; Pope, Phillip B ; Wrighton, Kelly C ; Crill, Patrick M ; Chanton, Jeffrey P ; Saleska, Scott R ; Tyson, Gene W ; Rich, Virginia I ; Sullivan, Matthew B
Publisher:England: Nature Publishing Group
Journal title:Nature microbiology, 2018-08, Vol.3 (8), p.870-880
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Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
Author / Creator:Trubl, Gareth ; Jang, Ho Bin ; Roux, Simon ; Emerson, Joanne B ; Solonenko, Natalie ; Vik, Dean R ; Solden, Lindsey ; Ellenbogen, Jared ; Runyon, Alexander T ; Bolduc, Benjamin ; Woodcroft, Ben J ; Saleska, Scott R ; Tyson, Gene W ; Wrighton, Kelly C ; Sullivan, Matthew B ; Rich, Virginia I
Publisher:United States: American Society for Microbiology
Journal title:mSystems, 2018-09, Vol.3 (5)
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Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years
Author / Creator:Wang, Yulin ; Ye, Jun ; Ju, Feng ; Liu, Lei ; Boyd, Joel A. ; Deng, Yu ; Parks, Donovan H. ; Jiang, Xiaotao ; Yin, Xiaole ; Woodcroft, Ben J. ; Tyson, Gene W. ; Hugenholtz, Philip ; Polz, Martin F. ; Zhang, Tong
Publisher:London: BioMed Central
Journal title:Microbiome, 2021-10-06, Vol.9 (1), p.1-199
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GroopM: an automated tool for the recovery of population genomes from related metagenomes

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus

An evolving view of methane metabolism in the Archaea

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

Methane dynamics regulated by microbial community response to permafrost thaw

Early origins and evolution of microRNAs and Piwi-interacting RNAs in animals

Methanotrophy across a natural permafrost thaw environment

The Widespread Prevalence and Functional Significance of Silk-Like Structural Proteins in Metazoan Biological Materials

Genome-centric view of carbon processing in thawing permafrost

Methylotrophic methanogenesis discovered in the archaeal phylum Verstraetearchaeota

Divergent methyl-coenzyme M reductase genes in a deep-subseafloor Archaeoglobi

Discovery of a novel methanogen prevalent in thawing permafrost

Does the High Gene Density in the Sponge NK Homeobox Gene Cluster Reflect Limited Regulatory Capacity?

Diverse sediment microbiota shape methane emission temperature sensitivity in Arctic lakes

Validation of picogram- and femtogram-input DNA libraries for microscale metagenomics

Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum

Drug target prediction and prioritization: using orthology to predict essentiality in parasite genomes

Host-linked soil viral ecology along a permafrost thaw gradient

Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing

Successional dynamics and alternative stable states in a saline activated sludge microbial community over 9 years

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